pdb2pqr
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pdb2pqr
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Index
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Index
_
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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V
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W
_
__init__() (pdb2pqr.config.DuplicateFilter method)
(pdb2pqr.inputgen.Input method)
(pdb2pqr.psize.Psize method)
A
AMBER (pdb2pqr.config.ForceFields attribute)
ApbsCalcType (class in pdb2pqr.config)
ATOM (pdb2pqr.config.AtomType attribute)
AtomType (class in pdb2pqr.config)
B
Backbone (class in pdb2pqr.config)
BaseEnum (class in pdb2pqr.config)
BYTES_PER_GRID (in module pdb2pqr.config)
BYTES_STORED (in module pdb2pqr.config)
C
C (pdb2pqr.config.Backbone attribute)
CA (pdb2pqr.config.Backbone attribute)
CHARMM (pdb2pqr.config.ForceFields attribute)
CL_CHARGE (in module pdb2pqr.config)
CL_RADIUS (in module pdb2pqr.config)
COARSE_GRID_FACTOR (in module pdb2pqr.config)
CRITICAL (pdb2pqr.config.LogLevels attribute)
D
DEBUG (pdb2pqr.config.LogLevels attribute)
DuplicateFilter (class in pdb2pqr.config)
E
ERROR (pdb2pqr.config.LogLevels attribute)
F
FilePermission (class in pdb2pqr.config)
filter() (pdb2pqr.config.DuplicateFilter method)
FINE_GRID_ADD (in module pdb2pqr.config)
FOCUS_FACTOR (in module pdb2pqr.config)
ForceFields (class in pdb2pqr.config)
G
get_cli_args() (in module pdb2pqr.inputgen)
(in module pdb2pqr.psize)
get_smallest() (pdb2pqr.psize.Psize method)
GRID_SPACING (in module pdb2pqr.config)
H
H (pdb2pqr.config.Backbone attribute)
HA (pdb2pqr.config.Backbone attribute)
HETATM (pdb2pqr.config.AtomType attribute)
HN (pdb2pqr.config.Backbone attribute)
I
INFO (pdb2pqr.config.LogLevels attribute)
Input (class in pdb2pqr.inputgen)
L
LogLevels (class in pdb2pqr.config)
M
main() (in module pdb2pqr.inputgen)
(in module pdb2pqr.psize)
MAX_PDB_ACCURACY (in module pdb2pqr.config)
MEMORY_CEILING_MB (in module pdb2pqr.config)
MG_AUTO (pdb2pqr.config.ApbsCalcType attribute)
MG_MANUAL (pdb2pqr.config.ApbsCalcType attribute)
MG_PARA (pdb2pqr.config.ApbsCalcType attribute)
MIN_GRID_POINTS (in module pdb2pqr.config)
MIN_LEVELS (in module pdb2pqr.config)
MIN_MOL_LENGTH (in module pdb2pqr.config)
module
pdb2pqr
pdb2pqr.config
pdb2pqr.inputgen
pdb2pqr.io
pdb2pqr.main
pdb2pqr.psize
N
N (pdb2pqr.config.Backbone attribute)
NA_CHARGE (in module pdb2pqr.config)
NA_RADIUS (in module pdb2pqr.config)
O
O (pdb2pqr.config.Backbone attribute)
O2 (pdb2pqr.config.Backbone attribute)
P
PARSE (pdb2pqr.config.ForceFields attribute)
PARTITION_OVERLAP (in module pdb2pqr.config)
pdb2pqr
module
pdb2pqr.config
module
pdb2pqr.inputgen
module
pdb2pqr.io
module
pdb2pqr.main
module
pdb2pqr.psize
module
PEOEPB (pdb2pqr.config.ForceFields attribute)
PREFIX_CONVERT (in module pdb2pqr.config)
print_input_files() (pdb2pqr.inputgen.Input method)
PROPKA (pdb2pqr.config.TitrationMethods attribute)
Psize (class in pdb2pqr.psize)
R
READ (pdb2pqr.config.FilePermission attribute)
read_input() (in module pdb2pqr.io)
ROOM_TEMPERATURE (in module pdb2pqr.config)
run_psize() (pdb2pqr.psize.Psize method)
S
setup_logger() (in module pdb2pqr.config)
SOLUTE_DIELECTRIC (in module pdb2pqr.config)
SOLVENT_DIELECTRIC (in module pdb2pqr.config)
SOLVENT_RADIUS (in module pdb2pqr.config)
SPLINE_WINDOW (in module pdb2pqr.config)
split_input() (in module pdb2pqr.inputgen)
SURFACE_DENSITY (in module pdb2pqr.config)
SURFACE_TENSION (in module pdb2pqr.config)
SWANSON (pdb2pqr.config.ForceFields attribute)
T
TITLE_STR (in module pdb2pqr.config)
TitrationMethods (class in pdb2pqr.config)
TN (pdb2pqr.config.Backbone attribute)
TYL06 (pdb2pqr.config.ForceFields attribute)
V
values() (pdb2pqr.config.BaseEnum class method)
W
WARNING (pdb2pqr.config.LogLevels attribute)
WRITE (pdb2pqr.config.FilePermission attribute)
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